Home Publications
Print

Publications of project partners

2012

  • Brusbardis V. Algorithm development of structure for dynamic computer model of biochemical networks. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 283-288.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/brusbardis_aict2012.pdf
  • Kostromins A. Altfluxes: COBRA Toolbox extension for flux variability analysis of stoichiometric models of metabolism. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 294-299.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/kostromins_aict2012.pdf
  • Kostromins A., Mozga I., Stalidzans E. ConvAn: a convergence analyzing tool for optimization of biochemical networks, Biosystems, Volume 108, Issues 1–3, April–June 2012, Pages 73-77, ISSN 0303-2647, 10.1016/j.biosystems.2011.12.004.
    Full text available at: http://dx.doi.org/10.1016/j.biosystems.2011.12.004
  • Kostromins A., Stalidzans E. Paint4Net: COBRA Toolbox extension for visualization of stoichiometric models of metabolism, Biosystems, Volume 109, Issue 2, August 2012, Pages 233-239, ISSN 0303-2647, 10.1016/j.biosystems.2012.03.002.
    Full text available at: http://dx.doi.org/10.1016/j.biosystems.2012.03.002
  • Meitalovs J., Bulipopa N., Kovalonoka O. Modeling and design tools for synthetic biology. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 341-347.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/meitalovs_1_aict2012.pdf
  • Meitalovs J. Process of genetic modification of microorganisms from the point of view of the software engineering. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 348-351.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/meitalovs_2_aict2012.pdf
  • Meitalovs J. The concept of metabolic engineering software tool. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 352-356.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/meitalovs_3_aict2012.pdf
  • Odzina I., Pentjuss A. Algorithm of Genome-scale metabolic engineering implementation. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 289-293.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/odzina_aict2012.pdf
  • Pentjuss A., Gailums A. Autonomous precision agricultural dynamic complex system. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 222-227.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/pentjuss_aict2012.pdf
  • Rove Z., Mednis M., Odzina I. Biochemical networks comparison tool. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 306-311.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/rove_aict2012.pdf
  • Rubina T., Stalidzans E. Evolution of alternative control loops of biological systems. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 317-324.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/rubina_aict2012.pdf
  • Sulins J., Stalidzans E. Corunner: multiple optimization run manager for Copasi software. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 312-316.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/sulins_aict2012.pdf
  • Vilums S., Grigs O. Application of functional stete modelling approach for yeast saccharomyces cerevisae batch fermentation state estimation. In Proceedings of the International Scientific Conference "Applied Information and Communication Technologies", April 26.-27., 2012, Jelgava, Latvia, ISBN 978-9984-48-065-7, pp. 300-305.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2012/vilums_aict2012.pdf

2011

  • Mozga I., Stalidzans E. Convergence Dynamics of Biochemical Pathway Steady State Stochastic Global Optimization, 12th IEEE International Symposium on Computational Intelligence and Informatics, CINTI 2011 - Proceedings, p. 231-235.
    Full text available at: cinti2011 mozga.pdf
  • Mozga I., Stalidzans E. Convergence Dynamics of Biochemical Models To The Global Optimum, 3rd IEEE International Conference on e-Health and Bioengineering, EHB 2011 – Proceedings, p. 227-230.
    Full text available at: ehb2011_mozga.pdf
  • A.Zacepins, J.Meitalovs, V.Komasilovs, E.Stalidzans. Temperature sensor network for prediction of possible start of brood rearing by indoor wintered honey bees, Proceedings of the 12th International Carpathian Control Conference (ICCC), 469-472., 2011, ISBN: 978-1-61284-360-5, Velké Karlovice, Czech Republic.
    Abstract available at: http://ieeexplore.ieee.org/Xplore/defdeny...
  • I. Odzi?a, R. Rutkis, U. Kalnenieks „In silico analysis of steady state mechanisms of biochemical networks” 10th International Scientific Conference Engineering for Rural development 2011, Vol 10, May 26-27, 2011, Jelgava 2011. 272-276 pp.
    Full text available at: http://tf.llu.lv/conference/proceedings2011/Papers/050_Odzina.pdf
  • J. Meitalovs „Development of chemostat supply system during fermentation process” 10th International Scientific Conference Engineering for Rural development 2011, Vol 10, May 26-27, 2011, Jelgava 2011. 115 - 120 pp.
    Full text available at: http://tf.llu.lv/conference/proceedings2011/Papers/021_Meitalovs.pdf
  • Mozga I., Kostromins A., Stalidzans E, FORECAST OF NUMERICAL OPTIMIZATION PROGRESS OF BIOCHEMICAL NETWORKS, In 10th International Scientific Conference Engineering for Rural Development, Jelgava, Latvia, May 26-27, ISSN 1691-3043, pp 103-108.
    Full text available at: http://tf.llu.lv/conference/proceedings2011/Papers/019_Mozga.pdf
  • Mozga I., Stalidzans E. Optimization protocol of biochemical networks for effective collaboration between industry representatives, biologists and modellers, 9th International Industrial Simulation Conference (ISC'2011), Venice, Italy, 2011. 91 – 96 pp.
    Full text available at: isc2011_mozga_stalidzans.pdf
  • S. Vi?ums „Towards application of cellular metabolic model of Saccharomyces cerevisiae in bioprocess control algorithm” 10th International Scientific Conference Engineering for Rural development 2011, Vol 10, May 26-27, 2011, Jelgava 2011. 97 - 102 pp.
    Full text available at: http://tf.llu.lv/conference/proceedings2011/Papers/018_Vilums.pdf

2010

  • J.Meitalovs, Use of sensor group measurements for the bioreactor control adaptation, 4-th International Conference „Applied Information and Communication Technologies 2010”, 55., 2010, ISBN 978-9984-48-022-0, Jelgava, Latvia.
    Abstract available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Meitalovs_abstract_2010.pdf
  • Kovalonoka O. Structural model of action mechanism of antiischemic drug mildronate, In Proceedings of Applied Information and Communication Technologies 2010, 22.-23. April 2010, Jelgava, Latvia, pp. 27-31.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Kovaljonoka_2010.pdf
  • M. Mednis, J. Meitalovs, S. Vilums, J. Vanags, V. Galvanauskas „Bioprocess monitoring and control using mobile devices” Information Technology and control,2010, Vol 39, No.3 – 195-201 pp.
    Full text available at: http://itc.ktu.lt/itc393/Galvan393.pdf
  • Odzina I., Rubina T., Rutkis R., Kalnenieks U., Stalidznas E. Structural Model of biochemical network of Zymomonas mobilis adaptation for glycerol conversion into bioethanol, In Proceedings of Applied Information and Communication Technologies 2010, 22.-23. April 2010, Jelgava, Latvia, pp. 50-54.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Odzina_2010.pdf
  • Rubina T., Stalidzans E. Software tools for structure analysis of biochemical networks, In Proceedings of Applied Information and Communication Technologies 2010, 22.-23. April 2010, Jelgava, Latvia, pp. 33-49.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Rubina_2010.pdf
  • Rubina T., Stalidzans E. Topological features and parameters of Biochemical Network Structures, 8-th International Industrial Simulation Conference 2010, Budapest, pp. 228-236.
    Full text available at: Rubina 2010 ISC graph analysis software.pdf
  • Stepina D., Stalidzans E. Applications of modelling in synthetic biology, In Proceedings of Applied Information and Communication Technologies 2010, 22.-23. April 2010, Jelgava, Latvia, pp. 10-17.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Stepina_2010.pdf
  • Sulins J., Kostromins A. Automated multi – measurement system for research of drying processes, In Proceedings of Applied Information and Communication Technologies 2010, 22.-23. April 2010, Jelgava, Latvia, pp. 235-241.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Sulins_2010.pdf
  • U.Iljins, J.Meitalovs, I.Ziemelis, The use of mathematical physics in solving engineering problems, 4-th International Conference „Applied Information and Communication Technologies 2010”’, 225.-229., 2010, ISBN 978-9984-48-022-0, Jelgava, Latvia.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Iljins%20U_2010.pdf
  • Vilums S. Bioprocess realtime fault detection and diagnosis based on model and expertise, In Proceedings of Applied Information and Communication Technologies 2010, 22.-23. April 2010, Jelgava, Latvia, pp. 18-25.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Vilums_2010.pdf
  • Zacepins A., Meitalovs J., Stalidzans E. Model Based Real Time Automated Temperature Control System for Risk Minimization in Honey Bee Wintering Building, 8-th International Industrial Simulation Conference 2010, Budapest, pp. 245-247.
    Abstract available at: http://aict.itf.llu.lv/files/rakstkraj/2010/Zacepins_abstract_2010.pdf

2009

2008

  • Lagzdina L., Mozga I., Stalidzans E. Algorithm for Bioethanol Yield Optimisation in Saccharomyces cerevisiae Glycolysis using „COPASI” In proceedings of Applied Information and Communication Technologies 2008, 10.-11. April 2008, Jelgava, Latvia, pp. 95-101.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2008/Lagzdina_2008.pdf
  • Osad?uks V., Stalidzans E. Metabolic Activity Assessment Specialised Microclimate Chamber with Control System, In Proceedings of Applied Information and Communication Technologies 2008, 10.-11. April 2008, Jelgava, Latvia, pp. 78-85.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2008/Osadcuks_2008.pdf
  • Stalidzans E., Mozga I., Modular Approach Teaching Systems Biology to Monodisciplinary Specialists in European Project „MOSBIO”. In proceedings of Applied Information and Communication Technologies 2008, 10.-11. April 2008, Jelgava, Latvia, pp. 141-145.
    Full text available at: http://aict.itf.llu.lv/files/rakstkraj/2008/Stalidzans_1_2008.pdf
  • U. Kalnenieks, N. Galinina, I. Strazdina, Z. Kravale, J.L. Pickford, R. Rutkis, R.K. Poole (2008) NADH dehydrogenase deficiency results in low respiration rate and improved aerobic growth of Zymomonas mobilis. Microbiology 154: 989-994.

2007

  • Mozga I., Grunde-Zeiferts U., Sudars S., Stalidzans E. Life cycles and competition in modelling of artificial and biological control system. ESM 2007, Malta, 23.-26. October 2007, p. 533-536.
    Full text available at: Mozga 2007 Malta life cycles competition.pdf
  • Mozga I., Stalidzans E. Application of dynamic models of glycolysis developing control system. 6th International Scientific Conference “Engineering for Rural Development”, Jelgava, Latvia, 24 – 25 May 2007 p. 119-123.
    Full text available at: Mozga 2007 TF Glycolysis.pdf
  • Stalidzans E. Markovics Z., Krauze A., Bilinskis V., Berzonis A. Modeling of bee wintering building profitability. Journal of Apicultural Science, Vol.51 No.2, 2007, p. 25-31.
    Full text available at: http://api.opisik.pulawy.pl/jas_51_2_2007_5.pdf
  • U. Kalnenieks, R. Rutkis, Z. Kravale, I. Strazdina, N. Galinina (2007) High aerobic growth with low respiratory rate: The ndh-deficient Zymomonas mobilis. Journal of Biotechnology 131(2S), S264.
  • Vanags J., M. Rychtera, S. Ferzik, M. Vishkins, U. Viesturs, Oxygen and temperature control in cultivation of microorganisms by substrate feeding.2007, Eng. Life Sci., 2007, vol.7, Issue 3, p.254-259.

2006

  • Pencheva T., M.Petrov, T.Ilkova, O.Roeva, J.Vanags, U.Viesturs, S.Tzonkov. Bioprocess Engineering. 2006, Sofia, p.253.
  • Stalidzans E. Biological control system approach in description of dynamics of biological object. 1-st International Symposium on Systems Biology, Murcia, Spain, June 1-3, 2006, pp. 44
    Abstract available at: Stalidzans 2006 abstr Murcia Spain.pdf
  • Stalidzans E. Control of biological objects as collaboration of biological and artificial control systems. Proceedings of International conference ?Engineering for rural development?, 17.-20. May 2006, Latvia, Jelgava. p. 204-208.
    Full text available at: Stalidzans 2006 collab biol and technic.pdf
  • Stalidz?ns E., Gailums A., Mozga I., Life cycle of artificial and biological control system International conference ?Information technologies in rural development?, Jelgava, Latvia. 19.-20. October 2006, p 164-172.
  • Stalidz?ns E., Grunde-Zeiferts U., Brusb?rdis V. Classification of nodes transforming topological model of biological process to a dynamic functional model. International conference ?Information technologies in rural development?, Jelgava, Latvia. 19.-20. October 2006, p 158-163.
  • Stalidz?ns E., Markovi?s Z. Expert survey on topological model development for microclimate control in wintering bee colony. International conference "Information technologies in rural development", Jelgava, Latvia. 19.-20. October 2006, p 149-157.
  • U. Kalnenieks, N. Galinina, M.M. Toma, J.L. Pickford, R. Rutkis, R.K. Poole (2006) Respiratory behaviour of a Zymomonas mobilis adhB::kanr mutant supports the hypothesis of two alcohol dehydrogenase isoenzymes catalysing opposite reactions. FEBS Letters 580: 5084-5088.
  • U. Kalnenieks (2006) Physiology of Zymomonas mobilis: some unanswered questions. Advances in Microbial Physiology 51: 73-117.
  • Žukova T., Stalidz?ns E., Systems biology ? interaction science of biology and information technology. International conference "Information technologies in rural development" , Jelgava, Latvia. 19.-20. October 2006, p 120-130.

2005

  • Stalidzans E., Z. Markovitch. Development of dynamic model for a biological system under conditions of insufficient information. In Proceedings of ITAFE?05 International Congress on Information Technology in Agriculture, Food and Environment, October 12-14, 2005, Adana, Turkey, p. 337-344.
    Full text available at: http://www2.llu.lv/homepg/biosystems/upload_files/File/2005_Turkey_biol_din_modCOPY.pdf
  • Stalidzans E., Z. Markovitch. Methodology of control system development for biological systems under information insufficiency. European Modelling Simulation Symposium EMSS 2005, Marseille, France, 20-22.October 2005. p.169-175.
    Full text available at: http://www2.llu.lv/homepg/biosystems/upload_files/File/2005_Marsela_biol_insuffCOPY.pdf
  • U. Kalnenieks, N. Galinina, M. M. Toma (2005) Physiological regulation of the properties of alcohol dehydrogenase II (ADH II) of Zymomonas mobilis: NADH renders ADH II resistant to cyanide and aeration. Archives of Microbiology 183: 450-455.

2004

2003

  • Bilinskis V., E. Stalidzans, Z. Markowitsch, A. Berzonis. Modelling of wintering building profitability depending on outside temperature and humidity. In Final Programme and book of abstracts of XXXVIIIth APIMONDIA International Apicultural Congress., August 24.-29., 2003, Ljubljana, Slovenia. Paper No. 97
    Abstract available at: Stalidzans 2003 abstr wint build profit.pdf
  • Krauze A., V. Bilinskis, E. Stalidzans, A. Berzonis. Different states of bee colony in winter and spent power. In Final Programme and book of abstracts of XXXVIIIth APIMONDIA International Apicultural Congress., August 24.-29., 2003, Ljubljana, Slovenia. Paper No. 99.
    Abstract available at: Stalidzans 2003 abstr winter power.pdf
  • M. M. Toma, U. Kalnenieks, A. Berzins, A. Vigants, M. Rikmanis, U. Viesturs (2003) The effect of mixing on glucose fermentation by Zymomonas mobilis continuous culture. Process Biochemistry 38: 1347-1350.
  • U. Kalnenieks, M. M. Toma, N. Galinina, R. K. Poole (2003) The paradoxical cyanide-stimulated respiration of Zymomonas mobilis: cyanide-sensitivity of alcohol dehydrogenase (ADH II). Microbiology 149: 1739-1744.

2002

  • U. Kalnenieks, N. Galinina, M. M. Toma, U. Marjutina (2002) Ethanol cycle in an ethanologenic bacterium. FEBS Letters 522: 6-8.

2001

  • Stalidzans E., Z. Markovitch, A. Krauze, A. Berzonis. Simulation of death dynamics of wintering generation of bees under different climatical conditions. 15-th European Simulation Multiconference 2001. June 6-9, 2001, Prague, Czech Republic, 1039-1043.
    Full text available at: Stalidzans 2001 simul death dynamics.pdf

2000

  • R. K. Poole and U. Kalnenieks (2000) Introduction to light absorption: visible and ultraviolet spectra. In: Spectrophotometry & Spectrofluorimetry. A Practical Approach (ed. Michael G. Gore). Oxford University Press, Oxford, pp. 1-32 (368 pages).
  • Stalidzans E., A. Krauze, A. Berzonis. Modelling of energetical balance of honeybee wintering generation. Psczelnicze zestyty naukowe 2000, No.2, 55-62.
    Full text available at: Stalidzans 2000 Energ Balance.pdf
  • Stalidzans E., Z. Markovitch. Expert based model building using incidence matrix and topological model. 12-th European simulation Symposium 2000. Hamburg, Germany. 328-332.
    Full text available at: Stalidzans 2000 incidence matrix.pdf
  • U. Kalnenieks, N. Galinina, M.M. Toma, R. K. Poole (2000) Cyanide inhibits respiration, yet stimulates aerobic growth of Zymomonas mobilis. Microbiology 146: 1259-1266.

1999

  • Stalidzans E., V. Bilinskis, A. Berzonis. Hypothesis of modelling energetical balance of bee colonies and changes in the number of bees. 1999. Proceedings. Apimondia 99. 36-th Congress, Vancouver, Canada, 278.
    Abstract available at: Stalidzans 1999 Energ balance.pdf

1998

  • U. Kalnenieks, N. Galinina, S. Bringer-Meyer, R. K. Poole (1998) Membrane D-lactate oxidase in Zymomonas mobilis: evidence for a branched respiratory chain. FEMS Microbiol. Lett. 168: 91-97.
 


Systems biology, Powered by Joomla!; Joomla templates by SG web hosting